If you want to stand out among others in your master’s degree, you should pursue your master’s in a regular mode from a government university. This will later help you to pursue your further studies in post-graduate degrees, like Ph.D.
So it is suggested that you work a bit harder and try to get admission in a government college with the course offered in the regular mode. However, if you merely require a master’s degree, you can pursue it from any educational institution.