I think the major problem that IIT Jodhpur faces is its locational disadvantages. It lacks facilities like flight connectivity with other metros and this directly affects the number and quality of MNCs that visit during placements.
Another problem that IIT Jodhpur students face is the long distance between hostels and college as they have to spend a lot of money traveling between campus and hostels. IIT Jodhpur also lacks in terms of academia and industrial ties again because of its poor location. However, the Mechanical engineering department has started several industry immersion programs so exposure is not an issue for them.