Well, it depends upon several factors. A few of them are as mentioned below.
There are other factors, or possible scenarios, such as,
The above scenarios can give you possible average outcomes, but there can be vague contradictions as well. You also need to consider which subject interests you.
According to various student reviews, the preference order for CSE and Mechanical is MNNIT > NITJ. You should always give preference to the branch rather than the institute. Hope this clarifies most of your doubts.