Both the AIIMS Jodhpur and Bhubaneswar are reputed medical colleges with similar curricula and facilities. Usually, students consider the proximity to home while making this decision. That being said, most North Indians prefer Jodhpur while South Indians prefer Bhubaneswar.
The other factor people consider is the nature of college life offered by these. Jodhpur is a tourist heritage city with a very hot climate whereas Bhubaneswar is a capital metro with a pleasant climate. Had I been in your place, I would have always chosen AIIMS Bhubaneswar over AIIMS Jodhpur. Here’s why
I don’t mean to demean AIIMS Jodhpur especially when it has the best sports facilities among all AIIMS. Ultimately it’s your decision to make!