IIT Bombay's Geology and IIT Roorkee’s Geophysics are well recognized for their excellent curriculums and research facilities.
However, IIT Roorkee or IIT Bombay depends on your preference and career goals.
I think I am qualified to answer this question as I graduated from IIT Kharagpur Geology and Geophysics department and I am working for ARM Group in the Middle East.
You should choose IIT Kharagpur due to following reasons:-